2007-10-13T15:43:00.001-07:00

Microarray Gene Expression Data Society - MGED Society

The Microarray Gene Expression Data (MGED) Society is an international organisation of biologists, computer scientists, and data analysts that aims to facilitate the sharing of microarray data generated by functional genomics and proteomics experiments.
The current focus is on establishing standards for microarray data annotation and exchange, facilitating the creation of microarray databases and related software implementing these standards, and promoting the sharing of high quality, well annotated data within the life sciences community. A long-term goal for the future is to extend the mission to other functional genomics and proteomics high throughput technologies.

Introduction to Microarrays
What happened to my home brew?
What can we learn from stressed out yeast?
Why are there so many copies of some genes but not others?
How well do promoters control gene expression?
Are promoters able to work in reverse?
Math Minutes:
4.1 How do you transform the data to avoid fractions?4.2 How do you measure similarity between expression patterns? 4.3 How do you cluster genes?
Section 4.2 Alternative Uses of DNA Microarrays
Why do so many different genes share the same expression profile?
Can cells verify their own genes?
Math Minutes:

MICROARRAY SYSTEM!

The Yale Microarray Database Project is a collaborative effort between several laboratories and centers to meet the urgent need to:

Archive (i.e. Oracle) and retrieve via query statements microarray images (each of which may be 50 megabytes for a two channel experiment) and accompanying analysis data from hundreds of different investigators.
Link each high resolution (i.e. single pixel) spot image with its attendant quantitative analysis data and NCBI sequence database entry.
Enable the facile use of a variety of statistical tools (some of which should be provided within the software package - others of which are available on the Web or will be developed later) to judge the significance of the microarray data and to then analyze it (i.e. cluster analysis).
Make all of the above available via a web based interface.
If you are interested in supporting this effort, either at the university, departmental, section, or individual level please contact any of the YMD people.

With support from the Yale School of Medicine, the Departments of Genetics and Pathology; the Yale Cancer Center and the W.M. Keck Foundation Biotechnology Resource Laboratory joined together in 1999 and formed a DNA Microarray Resource in the School of Medicine that provides state-of-the-art services needed to allow this rapidly evolving technology to be applied to a wide spectrum of biomedical research. DNA microarrays offer the ability to monitor changes in the level of expression of large subsets of genes from a variety of organisms on a scale unattainable by other methods

GENERIC MICROARRAYS CURRENTLY AVAILABLE AT THE RESOURCE

Slide availability: Sept, 2005
OHU28K: Human 28K 70mer oligo array - Operon:

OMM25K: Mouse 25K 70mer oligo array - Operon:

Gene lists

Fee Schedule

Retired arrays can be special-ordered with a 50 slide minimum.

Standard volume discounts available for ALL investigators on ALL arrays.

10% on 10 arrays in a single Order/Shipment

20% on 20 arrays in a single Order/Shipment

35% on 50 arrays in a single Order/Shipment

50% on 100 arrays in a single Order/Shipment

2007-08-14T15:13:00.000-07:00

New Site

[BioC] Course in analysis of micoarray data using Bioconductor and RMalene Herbsleb HERBSLEB at KI.AU.DK Thu Mar 25 15:16:50 CET 2004Previous message: [BioC] Problem with latest win32 package installs Next message: [BioC] Course in analysis of micoarray data using Bioconductor and R Messages sorted by: [ date ] [ thread ] [ subject ] [ author ]Molecular Diagnostic LaboratoryAarhus University Hospital, Skejby Sygehus

Microarray Gene Expression Data Society - MGED SocietyThe Microarray Gene Expression Data (MGED)

Society is an international organisation of biologists, computer scientists, and data analysts that aims to facilitate the sharing of microarray data generated by functional genomics and proteomics experiments.The current focus is on establishing standards for microarray data annotation and exchange, facilitating the creation of microarray databases and related software implementing these standards, and promoting the sharing of high quality, well annotated data within the life sciences community. A long-term goal for the future is to extend the mission to other functional genomics and proteomics high throughput technologies.Introduction to MicroarraysWhat happened to my home brew?What can we learn from stressed out yeast?Why are there so many copies of some genes but not others?How well do promoters control gene expression?Are promoters able to work in reverse?Math Minutes:4.1 How do you transform the data to avoid fractions?4.2 How do you measure similarity between expression patterns? 4.3 How do you cluster genes?Section 4.2 Alternative Uses of DNA MicroarraysWhy do so many different genes share the same expression profile?Can cells verify their own genes?Math Minutes:MICROARRAY SYSTEM!The Yale Microarray Database Project is a collaborative effort between several laboratories and centers to meet the urgent need to:Archive (i.e. Oracle) and retrieve via query statements microarray images (each of which may be 50 megabytes for a two channel experiment) and accompanying analysis data from hundreds of different investigators.Link each high resolution (i.e. single pixel) spot image with its attendant quantitative analysis data and NCBI sequence database entry.Enable the facile use of a variety of statistical tools (some of which should be provided within the software package - others of which are available on the Web or will be developed later) to judge the significance of the microarray data and to then analyze it (i.e. cluster analysis).Make all of the above available via a web based interface.If you are interested in supporting this effort, either at the university, departmental, section, or individual level please contact any of the YMD people.With support from the Yale School of Medicine, the Departments of Genetics and Pathology; the Yale Cancer Center and the W.M. Keck Foundation Biotechnology Resource Laboratory joined together in 1999 and formed a DNA Microarray Resource in the School of Medicine that provides state-of-the-art services needed to allow this rapidly evolving technology to be applied to a wide spectrum of biomedical research. DNA microarrays offer the ability to monitor changes in the level of expression of large subsets of genes from a variety of organisms on a scale unattainable by other methodsGENERIC MICROARRAYS CURRENTLY AVAILABLE AT THE RESOURCESlide availability: Sept, 2005OHU28K: Human 28K 70mer oligo array - Operon:OMM25K: Mouse 25K 70mer oligo array - Operon:Gene lists Fee ScheduleRetired arrays can be special-ordered with a 50 slide minimum.Standard volume discounts available for ALL investigators on ALL arrays.10% on 10 arrays in a single Order/Shipment20% on 20 arrays in a single Order/Shipment35% on 50 arrays in a single Order/Shipment50% on 100 arrays in a single Order/Shipment

Video Download